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Precision Reagents for Modern Pathogen Detection Laboratories

As public health laboratories and clinical research labs expand molecular testing for infectious diseases, the demand for sensitive, resilient assays with faster turnaround times continues to grow. Scientists require solutions that deliver confident detection across diverse sample types while maintaining performance in high‑throughput and resource‑limited settings.

Quantabio addresses these challenges with qPCR, RT‑qPCR, and next‑generation sequencing (NGS) solutions designed to maintain assay sensitivity and consistency across inhibitor‑rich samples. Our technologies support reliable low limits of detection for viral, bacterial, and fungal pathogens—helping laboratories generate dependable results when they matter most.

Check out a list of validated PHL assay using Quantabio reagents


5 Reasons Why Pathogen Detection Matters

 

  1. Protects Population Health Through Early Detection
    Rapid and accurate pathogen detection enables earlier diagnosis, treatment, and intervention to help reduce disease transmission.
    Sensitive molecular testing can identify infections before they spread widely through communities.
  2. Enables Rapid Outbreak Containment and Surveillance
    Scalable testing solutions support real-time monitoring of infectious diseases, helping laboratories and public health agencies quickly identify outbreaks and track emerging threats.
  3. Guides Clinical & Public Health Decision Making
    Accurate pathogen identification helps clinicians select appropriate treatments while providing data that informs public health policies, vaccination strategies, and resource planning.
  4. Strengthens Preparedness for Emerging Threats
    Flexible molecular testing technologies enable rapid development and deployment of assays for new pathogens, improving readiness for future outbreaks and public health emergencies.
  5. Safeguards Economic & Social Stability
    Early pathogen detection helps minimize disruptions to healthcare systems, workplaces, education, and travel by supporting faster intervention and reducing widespread transmission.

Key Applications

 

Bacterial & Fungal Detection

qPCR

Rapid and accurate detection and quantification of bacterial and fungal DNA by qPCR is critical for identifying species and supporting informed triage of infectious pathogens. Quantabio qPCR solutions deliver robust amplification from inhibitor‑rich samples to support confident detection and quantification.

Multiplex Virus Detection

RT‑qPCR

Increase results per sample with easy‑to‑use, one‑step RT‑qPCR workflows supporting up to five multiplex RNA targets. These solutions enable detection and differentiation of multiple respiratory and other RNA viruses—including SARS‑CoV‑2, influenza A/B, RSV, and more — in a single reaction.

Surveillance & Genotyping

Sequencing

Metagenomic sequencing using short‑ and long‑read NGS enables broad identification of infectious pathogens, detection of co‑infections, and monitoring of emerging or re‑emerging strains. Quantabio sequencing workflows support population‑level surveillance and genotyping through reliable library preparation and amplification of complex targets.

Overcoming Molecular Testing Challenges

Clinical and environmental samples — including swabs, blood, saliva, stool, and environmental surfaces — often contain PCR inhibitors that can compromise amplification efficiency and data quality. These challenges can delay results and hinder public health decision‑making.

 

Quantabio’s proprietary ToughMix® chemistry powers through common inhibitors to deliver reliable amplification from challenging samples. ToughMix formulations enable sensitive detection even from crude lysates, supporting extraction‑free workflows that reduce cost, time, and complexity — particularly valuable in resource‑limited or high‑throughput testing environments.

Inhibitors Common Source Reagent Performance
    Competitor ToughMix
Polyphenols Plant extracts
Humic acid Soil
Plant tissues
Hematin Dried bloods
Blood spots
Hemoglobin Blood
Polysaccharides Feces
Plant tissues
Melanin Hair
Skin

ToughMix

Designed for Diverse Pathogen qPCR Applications

Inhibitor-tolerant qPCR detection and quantification enables faster time to result and can reduce the need for laborious extraction methods in resource-limited settings.

 

qPCR Workflow

Library_prep

Extraction

HiFi Amplification

Detection

 

 

sparQ

Designed for Diverse Pathogen Sequencing

Next-generation sequencing is a powerful tool for the surveillance of new and evolving pathogens. In particular, metagenomic sequencing can be used to identify co-infections or novel divergent viruses that may be missed by lower throughput methods like qPCR analysis.

Quantabio’s sparQ library prep kits deliver a rapid, robust, and cost-effective solution for NGS library generation to support pathogen sequencing workflows.

Whole Genome Sequencing Workflow

Library_prep

Library Preparation

HiFi Amplification

CleanUp &
Size Selection
Library Quantification

Discover the Right Solution for Your Application

From inhibitor‑tolerant qPCR and RT‑qPCR to advanced sequencing workflows, Quantabio provides trusted solutions for pathogen detection, surveillance, and genotyping.

 

qPCR Applications


Product Bacterial / Fungal
Pathogen Detection / Quantification
Viral Pathogen
Detection / Quantification
Genotyping
PerfeCTa qPCR ToughMix / Multiplex ToughMix X X
UltraPlex 1‑Step ToughMix X X
qScript XLT 1‑Step ToughMix X X
eQo 1‑Step ToughMix X X
qScript Ultra Flex Kit X

 

 


Sequencing Applications

 

Product 16S / 18S / ITS
Amplicon Sequencing
AMR Testing
and Tracking
Whole Genome
Sequencing
Whole Viral RNA
Sequencing
Long Read
Sequencing
qScript Ultra Flex Kit X X
repliQa HiFi ToughMix X X X X
sparQ DNA Library Prep Kits X X X

Validated Pathogen Detection Assays in Public Health

Quantabio is committed to supporting pathogen detection utilizing molecular tests for public health applications with our ToughMix PCR, qPCR and RT-qPCR reagents as well as NGS solutions. Since 2013, Quantabio products have been cited in testing protocols for viruses such as H7N9 Avian Influenza, Polio and COVID-19 and bacteria such as Legionella spp., Mycoplasma pneumoniae and Shiga toxin producing E. coli. These protocols are continually expanded to include new pathogens, or improve previous assays.

Fungal, Bacterial and Viral ID Assays

Borrelia
Customer Testimonials
PerfeCTa MultiPlex qPCR ToughMix

"The Perfecta Multiplex qPCR ToughMix greatly simplified my qPCR assay by removing DNA isolation steps and complexity of passive reference dyes. I will definitely be using this product in the future."

Bethany B. | Biotech company
PerfeCTa qPCR ToughMix

"This eliminates a costly and time consuming step to remove inhibitors manually, so it has saved us money on reagents and time for our small lab."

Max O. | Conservationist
PerfeCTa qPCR ToughMix

"Higher sensitivity, positives at a lower Cq. Great results with plant DNA with high inhibition level."

Paula S. | Lab Coordinator INIAV
UltraPlex 1-Step ToughMix

"Compared to other 1-step qRT-PCR mixes we have used, UltraPlex 1-Step ToughMix (4X) Low-ROX, 500R performs with the same sensitivity when testing using SARS-CoV-2-spiked saliva samples, but is easier to use and at a significantly lower price per reaction. The mix requires little to no time to thaw, decreasing the time required when preparing samples. The mix is also conveniently aliquoted into multiple tubes, reducing the chance for contamination as opposed to a single, high volume aliquot. Overall, these factors make this a better overall product as compared to competing companies (e.g., Thermo Fisher Scientific or Zymo) and we will continue to use this moving forward."

Rhoel R. D., PhD, MPH Professor of Infectious Diseases UF Eminent Scholar Director | CDC Southeastern Regional Center of Excellence for Vector Borne Diseases
qScript 1-Step Virus ToughMix

"1-Step Virus ToughMix performed BETTER than other 3 mixes and amplified very well the S target from SARS-CoV-2 in a highly multiplex environment."

Guillermo C. | Project Coordinator Sick Kids Molecular Diagnostics Lab

We’re Here to Help

Questions?

Questions about pathogen detection products or how they fit into your lab’s workflow?
Our team of experts are here to support you.

 

 

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Featured Resource

Explore Quantabio’s pathogen detection solutions for PCR, qPCR, RT-qPCR, and NGS workflows.

 

 

 

 

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Select Your Assay

Starting Template

Assay Format

Detection Chemistry

Multiplexing (more than 3 targets)

Is gene-specific priming (GSP) required?

What current Reverse Transcriptase or cDNA kit are you using?

Select the group which contains your real-time PCR cycler

  • Applied Biosystems 7500
  • Applied Biosystems 7500 Fast
  • Stratagene Mx3000P®
  • Stratagene Mx3005P™
  • Stratagene Mx4000™
  • Applied Biosystems ViiA 7
  • Applied Biosystems QuantStudio™
  • Agilent AriaMx
  • Douglas Scientific IntelliQube®
  • Applied Biosystems 5700
  • Applied Biosystems 7000
  • Applied Biosystems 7300
  • Applied Biosystems 7700
  • Applied Biosystems 7900
  • Applied Biosystems 7900HT
  • Applied Biosystems 7900 HT Fast
  • Applied Biosystems StepOne™
  • Applied Biosystems StepOnePlus™
  • Quantabio Q
  • BioRad CFX
  • Roche LightCycler 480
  • QIAGEN Rotor-Gene Q
  • Azure Cielo 6
  • Azure Cielo 3
  • Analytik Jena qTower
  • Analytik Jena qTOWERiris
  • Other
  • BioRad iCycler iQ™
  • BioRad MyiQ™
  • BioRad iQ™5

Choose your application from the categories below

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